matlab 2013.a code Search Results


matlab 2013a  (MathWorks Inc)
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matlab code  (MathWorks Inc)
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MathWorks Inc matlab code
Matlab Code, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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home-made matlab code  (MathWorks Inc)
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Home Made Matlab Code, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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custom code matlab v.2013a  (MathWorks Inc)
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Custom Code Matlab V.2013a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab 2013a/b  (MathWorks Inc)
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Matlab 2013a/B, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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in-house code in matlab 2013b  (MathWorks Inc)
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In House Code In Matlab 2013b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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custom-made matlab code v. 2013  (MathWorks Inc)
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MathWorks Inc custom-made matlab code v. 2013
Custom Made Matlab Code V. 2013, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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2013a  (MathWorks Inc)
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MathWorks Inc 2013a
2013a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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2013a - by Bioz Stars, 2026-04
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code for sumoflux  (MathWorks Inc)
90
MathWorks Inc code for sumoflux
From left to right: a schematic representation of the flux ratio; density plot representing <t>SUMOFLUX</t> estimates versus the true flux ratios for in silico data; comparison of the SUMOFLUX and analytic formula estimates for the experimental data; density plot representing analytic formula estimates versus the true flux ratios for in silico data. Vertical error bars in the third panel represent [10–90%] SUMOFLUX prediction quantiles, horizontal error bars represent standard deviation provided with the analytic formula estimate. (a) Glycolysis versus PPP. (b) Pyruvate fraction from the E-D pathway. (c) PEP fraction from gluconeogenesis. (d) Pyruvate fraction from the malic enzyme flux. (e) Oxaloacetate fraction from anaplerosis from PEP. Ratios (a)-(c) were estimated from [1- 13 C] glucose experiment, ratios (d) and (e) were estimated from 20% [U- 13 C] and 80% naturally labeled glucose experiment. 6PG– 6-phosho-D-gluconate; αKG– α-ketoglutarate; AcCoA—acetyl-CoA; E-D—Entner-Doudoroff pathway; F6P –fructose-6-phosphate; Fum—fumarate; G6P –glucose-6-phosphate; Gox—glyoxylate; ICT—isocitrate; KDPG—2-Keto-3-deoxy-6-phosphogluconate; MAE—mean absolute error; Mal—malate; PCC—Pearson correlation coefficient; PEP—phosphoenolpyruvate; PGA—phosphoglycerate; PPP—pentose phosphate pathway.
Code For Sumoflux, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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code for sumoflux - by Bioz Stars, 2026-04
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home-complied software cateasy  (MathWorks Inc)
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MathWorks Inc home-complied software cateasy
From left to right: a schematic representation of the flux ratio; density plot representing <t>SUMOFLUX</t> estimates versus the true flux ratios for in silico data; comparison of the SUMOFLUX and analytic formula estimates for the experimental data; density plot representing analytic formula estimates versus the true flux ratios for in silico data. Vertical error bars in the third panel represent [10–90%] SUMOFLUX prediction quantiles, horizontal error bars represent standard deviation provided with the analytic formula estimate. (a) Glycolysis versus PPP. (b) Pyruvate fraction from the E-D pathway. (c) PEP fraction from gluconeogenesis. (d) Pyruvate fraction from the malic enzyme flux. (e) Oxaloacetate fraction from anaplerosis from PEP. Ratios (a)-(c) were estimated from [1- 13 C] glucose experiment, ratios (d) and (e) were estimated from 20% [U- 13 C] and 80% naturally labeled glucose experiment. 6PG– 6-phosho-D-gluconate; αKG– α-ketoglutarate; AcCoA—acetyl-CoA; E-D—Entner-Doudoroff pathway; F6P –fructose-6-phosphate; Fum—fumarate; G6P –glucose-6-phosphate; Gox—glyoxylate; ICT—isocitrate; KDPG—2-Keto-3-deoxy-6-phosphogluconate; MAE—mean absolute error; Mal—malate; PCC—Pearson correlation coefficient; PEP—phosphoenolpyruvate; PGA—phosphoglycerate; PPP—pentose phosphate pathway.
Home Complied Software Cateasy, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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home-complied software cateasy - by Bioz Stars, 2026-04
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pso 2013  (MathWorks Inc)
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MathWorks Inc pso 2013
From left to right: a schematic representation of the flux ratio; density plot representing <t>SUMOFLUX</t> estimates versus the true flux ratios for in silico data; comparison of the SUMOFLUX and analytic formula estimates for the experimental data; density plot representing analytic formula estimates versus the true flux ratios for in silico data. Vertical error bars in the third panel represent [10–90%] SUMOFLUX prediction quantiles, horizontal error bars represent standard deviation provided with the analytic formula estimate. (a) Glycolysis versus PPP. (b) Pyruvate fraction from the E-D pathway. (c) PEP fraction from gluconeogenesis. (d) Pyruvate fraction from the malic enzyme flux. (e) Oxaloacetate fraction from anaplerosis from PEP. Ratios (a)-(c) were estimated from [1- 13 C] glucose experiment, ratios (d) and (e) were estimated from 20% [U- 13 C] and 80% naturally labeled glucose experiment. 6PG– 6-phosho-D-gluconate; αKG– α-ketoglutarate; AcCoA—acetyl-CoA; E-D—Entner-Doudoroff pathway; F6P –fructose-6-phosphate; Fum—fumarate; G6P –glucose-6-phosphate; Gox—glyoxylate; ICT—isocitrate; KDPG—2-Keto-3-deoxy-6-phosphogluconate; MAE—mean absolute error; Mal—malate; PCC—Pearson correlation coefficient; PEP—phosphoenolpyruvate; PGA—phosphoglycerate; PPP—pentose phosphate pathway.
Pso 2013, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
pso 2013 - by Bioz Stars, 2026-04
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Image Search Results


From left to right: a schematic representation of the flux ratio; density plot representing SUMOFLUX estimates versus the true flux ratios for in silico data; comparison of the SUMOFLUX and analytic formula estimates for the experimental data; density plot representing analytic formula estimates versus the true flux ratios for in silico data. Vertical error bars in the third panel represent [10–90%] SUMOFLUX prediction quantiles, horizontal error bars represent standard deviation provided with the analytic formula estimate. (a) Glycolysis versus PPP. (b) Pyruvate fraction from the E-D pathway. (c) PEP fraction from gluconeogenesis. (d) Pyruvate fraction from the malic enzyme flux. (e) Oxaloacetate fraction from anaplerosis from PEP. Ratios (a)-(c) were estimated from [1- 13 C] glucose experiment, ratios (d) and (e) were estimated from 20% [U- 13 C] and 80% naturally labeled glucose experiment. 6PG– 6-phosho-D-gluconate; αKG– α-ketoglutarate; AcCoA—acetyl-CoA; E-D—Entner-Doudoroff pathway; F6P –fructose-6-phosphate; Fum—fumarate; G6P –glucose-6-phosphate; Gox—glyoxylate; ICT—isocitrate; KDPG—2-Keto-3-deoxy-6-phosphogluconate; MAE—mean absolute error; Mal—malate; PCC—Pearson correlation coefficient; PEP—phosphoenolpyruvate; PGA—phosphoglycerate; PPP—pentose phosphate pathway.

Journal: PLoS Computational Biology

Article Title: SUMOFLUX: A Generalized Method for Targeted 13 C Metabolic Flux Ratio Analysis

doi: 10.1371/journal.pcbi.1005109

Figure Lengend Snippet: From left to right: a schematic representation of the flux ratio; density plot representing SUMOFLUX estimates versus the true flux ratios for in silico data; comparison of the SUMOFLUX and analytic formula estimates for the experimental data; density plot representing analytic formula estimates versus the true flux ratios for in silico data. Vertical error bars in the third panel represent [10–90%] SUMOFLUX prediction quantiles, horizontal error bars represent standard deviation provided with the analytic formula estimate. (a) Glycolysis versus PPP. (b) Pyruvate fraction from the E-D pathway. (c) PEP fraction from gluconeogenesis. (d) Pyruvate fraction from the malic enzyme flux. (e) Oxaloacetate fraction from anaplerosis from PEP. Ratios (a)-(c) were estimated from [1- 13 C] glucose experiment, ratios (d) and (e) were estimated from 20% [U- 13 C] and 80% naturally labeled glucose experiment. 6PG– 6-phosho-D-gluconate; αKG– α-ketoglutarate; AcCoA—acetyl-CoA; E-D—Entner-Doudoroff pathway; F6P –fructose-6-phosphate; Fum—fumarate; G6P –glucose-6-phosphate; Gox—glyoxylate; ICT—isocitrate; KDPG—2-Keto-3-deoxy-6-phosphogluconate; MAE—mean absolute error; Mal—malate; PCC—Pearson correlation coefficient; PEP—phosphoenolpyruvate; PGA—phosphoglycerate; PPP—pentose phosphate pathway.

Article Snippet: MATLAB code for SUMOFLUX and example scripts are available at http://www.imsb.ethz.ch/research/zamboni/resources.html All scripts are compatible with MATLAB 2013a (MathWorks Inc).

Techniques: In Silico, Comparison, Standard Deviation, Labeling

(a) A schematic representation of the glyoxylate shunt, TCA cycle and anaplerosis from PEP flux fractions. (b) Density plot representing SUMOFLUX estimates for the flux fraction from glyoxylate shunt versus the true flux ratios for in silico data. (c) Density plot representing SUMOFLUX estimates for the flux fraction from the TCA cycle versus the true flux ratios for in silico data. Both ratios were resolved for experiment with 20% [U- 13 C] and 80% naturally labeled glucose. (d) Predictions for the three flux fractions for the experimental data. αKG– α-ketoglutarate; AcCoA—acetyl-CoA; Fum—fumarate; Gox—glyoxylate; ICT—isocitrate; MAE—mean absolute error; Mal—malate; PEP—phosphoenolpyruvate; TCA—tricarboxylic acid cycle.

Journal: PLoS Computational Biology

Article Title: SUMOFLUX: A Generalized Method for Targeted 13 C Metabolic Flux Ratio Analysis

doi: 10.1371/journal.pcbi.1005109

Figure Lengend Snippet: (a) A schematic representation of the glyoxylate shunt, TCA cycle and anaplerosis from PEP flux fractions. (b) Density plot representing SUMOFLUX estimates for the flux fraction from glyoxylate shunt versus the true flux ratios for in silico data. (c) Density plot representing SUMOFLUX estimates for the flux fraction from the TCA cycle versus the true flux ratios for in silico data. Both ratios were resolved for experiment with 20% [U- 13 C] and 80% naturally labeled glucose. (d) Predictions for the three flux fractions for the experimental data. αKG– α-ketoglutarate; AcCoA—acetyl-CoA; Fum—fumarate; Gox—glyoxylate; ICT—isocitrate; MAE—mean absolute error; Mal—malate; PEP—phosphoenolpyruvate; TCA—tricarboxylic acid cycle.

Article Snippet: MATLAB code for SUMOFLUX and example scripts are available at http://www.imsb.ethz.ch/research/zamboni/resources.html All scripts are compatible with MATLAB 2013a (MathWorks Inc).

Techniques: In Silico, Labeling